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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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595 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
A4GALT
ENSSSCG00000026962
ENSG00000128274
Alpha 1,4-galactosyltransferase (P blood group)
Low tissue specificity
Detected in many
ABCA1
ENSSSCG00000005423
ENSG00000165029
ATP-binding cassette sub-family A member 1
Low tissue specificity
Detected in all
ACOT11
ENSSSCG00000037559
ENSG00000162390
Acyl-CoA thioesterase 11
Low tissue specificity
Detected in many
ACTA2
ENSSSCG00000010447
ENSG00000107796
Actin, aortic smooth muscle
Tissue enhanced
Detected in many
ductus deferens:
294.9
endometrium:
265.1
penis:
206.0
ACTG2
ENSSSCG00000008294
ENSG00000163017
Actin, gamma 2, smooth muscle, enteric
Tissue enriched
Detected in many
smooth muscle:
747.6
ACTN1
ENSSSCG00000036702
ENSG00000072110
Alpha-actinin-1
Tissue enhanced
Detected in all
smooth muscle:
150.4
ACTN4
ENSSSCG00000002965
ENSG00000130402
Actinin alpha 4
Low tissue specificity
Detected in all
ADAMTS12
ENSSSCG00000016816
ENSG00000151388
ADAM metallopeptidase with thrombospondin type 1 motif 12
Low tissue specificity
Detected in many
ADAMTS15
ENSSSCG00000015250
ENSG00000166106
ADAM metallopeptidase with thrombospondin type 1 motif 15
Low tissue specificity
Detected in many
ADAMTS2
ENSSSCG00000024043
ENSG00000087116
ADAM metallopeptidase with thrombospondin type 1 motif 2
Tissue enhanced
Detected in many
mesothelial tissue:
31.9
ADAMTS5
ENSSSCG00000012027
ENSG00000154736
ADAM metallopeptidase with thrombospondin type 1 motif 5
Tissue enhanced
Detected in many
adipose tissue:
42.4
cervix:
32.1
ADAMTS7
ENSSSCG00000001765
ENSG00000136378
ADAM metallopeptidase with thrombospondin type 1 motif 7
Tissue enhanced
Detected in many
heart:
47.8
ADAMTSL1
ENSSSCG00000040366
ENSG00000178031
ADAMTS like 1
Tissue enhanced
Detected in all
synovial tissue:
31.6
ADAMTSL3
ENSSSCG00000001793
ENSG00000156218
ADAMTS like 3
Tissue enriched
Detected in many
cartilage:
99.8
ADAMTSL4
ENSSSCG00000006651
ENSG00000143382
ADAMTS like 4
Tissue enhanced
Detected in many
cartilage:
56.3
ADGRA2
ENSSSCG00000015825
ENSG00000020181
Adhesion G protein-coupled receptor A2
Low tissue specificity
Detected in all
ADGRD1
ENSSSCG00000009745
ENSG00000111452
Adhesion G protein-coupled receptor D1
Tissue enhanced
Detected in many
mesothelial tissue:
53.9
ADGRG6
ENSSSCG00000004139
ENSG00000112414
Adhesion G protein-coupled receptor G6
Tissue enriched
Detected in many
cartilage:
97.1
ADM
ENSSSCG00000013408
ENSG00000148926
ADM Adrenomedullin Proadrenomedullin N-20 terminal peptide
Tissue enhanced
Detected in many
aorta:
30.1
cartilage:
36.0
AEBP1
ENSSSCG00000016754
ENSG00000106624
AE binding protein 1
Tissue enhanced
Detected in many
adrenal gland:
149.5
AFF4
ENSSSCG00000014291
ENSG00000072364
AF4/FMR2 family member 4
Low tissue specificity
Detected in all
AGRN
ENSSSCG00000022204
ENSG00000188157
Agrin
Low tissue specificity
Detected in all
AHNAK
ENSSSCG00000033010
ENSG00000124942
AHNAK nucleoprotein
Low tissue specificity
Detected in all
AJUBA
ENSSSCG00000029201
ENSG00000129474
Ajuba LIM protein
Low tissue specificity
Detected in all
AKAP1
ENSSSCG00000034994
ENSG00000121057
A-kinase anchor protein 1, mitochondrial
Tissue enhanced
Detected in all
heart:
54.5
testis:
78.8
AKAP12
ENSSSCG00000031733
ENSG00000131016
A-kinase anchoring protein 12
Low tissue specificity
Detected in many
ALDH1A2
ENSSSCG00000025578
ENSG00000128918
Aldehyde dehydrogenase 1 family member A2
Tissue enhanced
Detected in many
adipose tissue:
44.6
testis:
38.1
ALDH1A3
ENSSSCG00000004822
ENSG00000184254
Aldehyde dehydrogenase 1 family member A3
Tissue enhanced
Detected in many
mesothelial tissue:
42.7
ALOX15
ENSSSCG00000017923
ENSG00000161905
Arachidonate 15-lipoxygenase
Tissue enriched
Detected in many
mesothelial tissue:
243.3
AMELY
ENSSSCG00000031650
Amelogenin
Low tissue specificity
Detected in many
ANG
ENSSSCG00000031538
ENSG00000214274
Angiogenin
Tissue enhanced
Detected in many
liver:
105.2
ANGPTL1
ENSSSCG00000015522
ENSG00000116194
Angiopoietin-related protein 1 precursor
Tissue enhanced
Detected in many
smooth muscle:
52.2
ANGPTL2
ENSSSCG00000005608
ENSG00000136859
Angiopoietin-related protein 2 precursor
Tissue enhanced
Detected in many
cartilage:
130.4
ANGPTL4
ENSSSCG00000013599
ENSG00000167772
Angiopoietin-related protein 4
Tissue enhanced
Detected in many
adipose tissue:
47.6
aorta:
47.4
liver:
62.6
ovary:
66.6
ANO6
ENSSSCG00000000804
ENSG00000177119
Anoctamin 6
Low tissue specificity
Detected in all
ANTXR2
ENSSSCG00000009256
ENSG00000163297
Anthrax toxin receptor 2
Tissue enhanced
Detected in many
cervix:
64.3
smooth muscle:
70.0
ANXA1
ENSSSCG00000005267
ENSG00000135046
Annexin A1
Tissue enhanced
Detected in all
mouth:
174.6
ARHGAP10
ENSSSCG00000009029
ENSG00000071205
Rho GTPase activating protein 10
Low tissue specificity
Detected in all
ARHGAP28
ENSSSCG00000021612
ENSG00000088756
Rho GTPase activating protein 28
Low tissue specificity
Detected in many
ARHGAP29
ENSSSCG00000006889
ENSG00000137962
Rho GTPase activating protein 29
Low tissue specificity
Detected in all
ARHGAP6
ENSSSCG00000012112
ENSG00000047648
Rho GTPase activating protein 6
Tissue enhanced
Detected in many
cervix:
48.6
ARHGEF40
ENSSSCG00000023857
ENSG00000165801
Rho guanine nucleotide exchange factor 40
Low tissue specificity
Detected in all
ARSJ
ENSSSCG00000009122
ENSG00000180801
Arylsulfatase family member J
Tissue enhanced
Detected in many
cartilage:
59.1
ART4
ENSSSCG00000000607
ENSG00000111339
Ecto-ADP-ribosyltransferase 4 isoform 1
Tissue enhanced
Detected in many
lymphoid tissue:
28.9
ATF3
ENSSSCG00000015595
ENSG00000162772
Activating transcription factor 3
Tissue enhanced
Detected in many
aorta:
93.6
ductus deferens:
75.9
ATOH8
ENSSSCG00000008230
ENSG00000168874
Atonal bHLH transcription factor 8
Tissue enhanced
Detected in many
thyroid gland:
38.9
B3GNT9
ENSSSCG00000040139
ENSG00000237172
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9
Tissue enhanced
Detected in all
cartilage:
37.5
BAG3
ENSSSCG00000010686
ENSG00000151929
BCL2 associated athanogene 3
Tissue enhanced
Detected in all
skeletal muscle:
118.3
BCL7C
ENSSSCG00000007776
ENSG00000099385
BCL tumor suppressor 7C
Low tissue specificity
Detected in all
BDKRB2
ENSSSCG00000027030
ENSG00000168398
Bradykinin receptor B2
Tissue enhanced
Detected in all
synovial tissue:
31.5
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